PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G13750.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 348aa    MW: 36634.2 Da    PI: 10.6532
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G13750.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP42.91.3e-131361654978
                      EEETTT--SS--S-STTTT-------S--- CS
              SBP  49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      fh+l efD++k+sCr+rL++hn+rrrk+q+
  ONIVA11G13750.2 136 FHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 165
                      9**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114110.98185163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-11136167IPR004333Transcription factor, SBP-box
PfamPF031101.5E-7136162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEWAAAATKA ASWGMAVAAA AAAADDAGPT MLSFAGPSSS SSSPDAAAAA AAAAALHDFS  60
VRARPAAAAP ATRRALGRRV PVGPQPVPRL PPPPQGLRGP RQDAGGRRRR PGAALLPAMQ  120
PYRFSVHVLN MLRAIFHNLA EFDDGKKSCR KRLDGHNRRR RKPQHDALNP RSFLPYHQAN  180
QFSVYPQTFP IADQNADALM RPLDRHPPFS ISFSGTFREP KQFPFMQDGG SGLGAARHDL  240
LRPFSSPEDG ANITTTRSAC NGVPHGLDPE CALSLLSSSL HPSPAAGISS ATAPPQFAPS  300
SFSRIAASSQ AVTTAFASDG GSVAGDHVLV PAVTYEDPSQ AMPFSWQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145162KKSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336080.0AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355690.0AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.11e-149PREDICTED: putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y11e-151SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A0E0J2620.0A0A0E0J262_ORYNI; Uncharacterized protein
STRINGBGIOSGA033954-PA1e-154(Oryza sativa Indica Group)
STRINGORGLA11G0121600.11e-153(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-12SBP family protein